Variant report

Variant	rs1673219
Chromosome Location	chr7:138295947-138295948
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1659818	0.82[EUR][1000 genomes]
rs1659824	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1673220	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1673221	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1673222	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34492435	0.82[EUR][1000 genomes]
rs35879025	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv993410	chr7:138295818-138297312	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138293200-138298000	Weak transcription	Fetal Lung	lung
3	chr7:138293200-138298800	Weak transcription	Fetal Kidney	kidney
4	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:138293600-138297400	Weak transcription	HSMMtube	muscle
6	chr7:138294000-138296200	Enhancers	Fetal Intestine Large	intestine
7	chr7:138294600-138296400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr7:138294600-138296400	Enhancers	Fetal Intestine Small	intestine
9	chr7:138295200-138296000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr7:138295200-138296400	Enhancers	Liver	Liver
11	chr7:138295200-138296400	Enhancers	HepG2	liver
12	chr7:138295400-138296200	Enhancers	Ovary	ovary
13	chr7:138295600-138296200	Enhancers	Pancreas	Pancrea
14	chr7:138295800-138296000	Enhancers	K562	blood
15	chr7:138295800-138297200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:138295800-138297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:138295800-138297800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links