Variant report

Variant	rs1659824
Chromosome Location	chr7:138293643-138293644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1673217	0.91[EUR][1000 genomes]
rs1673219	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1673220	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1673221	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138287600-138303200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:138290200-138293800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:138291000-138294400	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:138291600-138294000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:138292000-138294200	Enhancers	Brain Germinal Matrix	brain
6	chr7:138292600-138294000	Weak transcription	Fetal Intestine Small	intestine
7	chr7:138292600-138295200	Weak transcription	HepG2	liver
8	chr7:138293000-138293800	Enhancers	Fetal Brain Male	brain
9	chr7:138293000-138294000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr7:138293000-138294400	Enhancers	Pancreas	Pancrea
11	chr7:138293200-138298000	Weak transcription	Fetal Lung	lung
12	chr7:138293200-138298800	Weak transcription	Fetal Kidney	kidney
13	chr7:138293200-138308400	Weak transcription	Primary T cells from cord blood	blood
14	chr7:138293400-138294000	Enhancers	Brain Anterior Caudate	brain
15	chr7:138293400-138294400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:138293400-138295200	Weak transcription	Liver	Liver
17	chr7:138293600-138297400	Weak transcription	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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