Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82131617..82134605-chr4:82154251..82156526,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11099465	0.85[ASN][1000 genomes]
rs11733845	0.83[ASN][1000 genomes]
rs11942269	0.83[ASN][1000 genomes]
rs13435660	0.84[AFR][1000 genomes]
rs1349641	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1443542	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1443543	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452364	0.85[ASN][1000 genomes]
rs1452366	0.91[JPT][hapmap]
rs1452367	0.85[AMR][1000 genomes]
rs1712387	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17428153	0.84[AFR][1000 genomes]
rs17499131	0.85[ASN][1000 genomes]
rs17500037	0.84[AFR][1000 genomes]
rs1993160	0.84[AFR][1000 genomes]
rs2034628	0.81[AMR][1000 genomes]
rs2041461	0.91[AFR][1000 genomes]
rs2058367	0.84[AFR][1000 genomes]
rs2159656	0.85[AMR][1000 genomes]
rs3114135	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4693996	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4694006	0.85[ASN][1000 genomes]
rs6535242	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6831114	0.85[ASN][1000 genomes]
rs6839968	0.88[CEU][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes]
rs7654102	0.84[AFR][1000 genomes]
rs7669131	0.84[AFR][1000 genomes]
rs7673578	0.84[AFR][1000 genomes]
rs7677239	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82153000-82157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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