Variant report

Variant	rs17428153
Chromosome Location	chr4:82320486-82320487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10013788	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10017744	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10021462	0.88[AMR][1000 genomes]
rs10028610	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11099465	0.87[EUR][1000 genomes]
rs11727754	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11731567	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11732090	0.92[AMR][1000 genomes]
rs11732106	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11736471	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11736583	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939135	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12332030	0.96[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13435660	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1349641	0.87[EUR][1000 genomes]
rs1377059	0.89[AMR][1000 genomes]
rs1443543	0.80[EUR][1000 genomes]
rs1452367	0.91[EUR][1000 genomes]
rs1551236	0.96[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1662845	0.84[AFR][1000 genomes]
rs17428097	0.96[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17500037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17500100	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993160	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2034628	0.88[EUR][1000 genomes]
rs2041461	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2058367	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2159656	0.92[EUR][1000 genomes]
rs2903765	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4693996	0.82[EUR][1000 genomes]
rs4694006	0.87[EUR][1000 genomes]
rs62303573	0.88[ASN][1000 genomes]
rs6535242	0.86[EUR][1000 genomes]
rs6535243	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6814785	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6819909	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6821450	0.89[AMR][1000 genomes]
rs6839968	0.91[EUR][1000 genomes]
rs6851443	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853731	0.92[AMR][1000 genomes]
rs7654102	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7660089	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664953	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7669131	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7673578	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7677239	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7681976	0.89[EUR][1000 genomes]
rs9307782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv980406	chr4:82310479-82337709	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv517921	chr4:82315470-82346835	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82316600-82321000	Enhancers	Fetal Intestine Large	intestine
2	chr4:82317000-82320800	Enhancers	Fetal Intestine Small	intestine
3	chr4:82319600-82321800	Enhancers	Fetal Muscle Leg	muscle
4	chr4:82320400-82321000	Enhancers	Right Atrium	heart

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