Variant report

Variant	rs11732090
Chromosome Location	chr4:82287714-82287715
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10013788	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10017744	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10021462	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10028610	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11727754	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11731567	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11732106	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11733845	0.91[EUR][1000 genomes]
rs11736471	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11736583	0.92[AMR][1000 genomes]
rs11939135	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11942269	0.91[EUR][1000 genomes]
rs12332030	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13435660	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1377059	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1443542	0.84[EUR][1000 genomes]
rs1452364	0.91[EUR][1000 genomes]
rs1452366	0.96[EUR][1000 genomes]
rs1551236	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17428097	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17428153	0.92[AMR][1000 genomes]
rs17499131	0.91[EUR][1000 genomes]
rs17500037	0.92[AMR][1000 genomes]
rs17500100	0.91[AMR][1000 genomes]
rs1993160	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2034630	0.91[EUR][1000 genomes]
rs2041461	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2058367	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4693234	0.94[EUR][1000 genomes]
rs62303573	0.86[EUR][1000 genomes]
rs6535243	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6814785	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6819909	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6821450	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6831114	0.90[EUR][1000 genomes]
rs6853731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7654102	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7660089	0.92[AMR][1000 genomes]
rs7664953	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7669131	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7673578	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7677239	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7680637	0.94[EUR][1000 genomes]
rs7685645	0.95[EUR][1000 genomes]
rs7694769	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9307782	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82287200-82287800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:82287200-82287800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:82287200-82288000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:82287200-82288000	Enhancers	NHLF	lung
5	chr4:82287400-82287800	Enhancers	NHDF-Ad	bronchial
6	chr4:82287600-82287800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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