Variant report

Variant	rs10028610
Chromosome Location	chr4:82318524-82318525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:82317438..82320291-chr4:82320653..82322618,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10013788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10017744	0.86[AMR][1000 genomes]
rs10021462	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11727754	0.86[AMR][1000 genomes]
rs11731567	0.88[AMR][1000 genomes]
rs11732090	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11732106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11733845	0.87[EUR][1000 genomes]
rs11736471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11736583	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11939135	0.88[AMR][1000 genomes]
rs11942269	0.87[EUR][1000 genomes]
rs12332030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13435660	0.91[AMR][1000 genomes]
rs1377059	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1443542	0.81[EUR][1000 genomes]
rs1452364	0.87[EUR][1000 genomes]
rs1452366	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1551236	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17428097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17428153	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17499131	0.87[EUR][1000 genomes]
rs17500037	0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17500100	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1993160	0.91[AMR][1000 genomes]
rs2034630	0.88[EUR][1000 genomes]
rs2041461	0.91[AMR][1000 genomes]
rs2058367	0.89[AMR][1000 genomes]
rs2903765	0.93[ASN][1000 genomes]
rs4693234	0.91[EUR][1000 genomes]
rs62303573	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6535243	0.91[AMR][1000 genomes]
rs6814785	0.86[AMR][1000 genomes]
rs6819909	0.86[AMR][1000 genomes]
rs6821450	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6831114	0.87[EUR][1000 genomes]
rs6839968	0.84[CEU][hapmap]
rs6851443	0.93[ASN][1000 genomes]
rs6853731	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7654102	0.91[AMR][1000 genomes]
rs7660089	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7664953	0.86[AMR][1000 genomes]
rs7669131	0.91[AMR][1000 genomes]
rs7673578	0.89[AMR][1000 genomes]
rs7677239	0.88[AMR][1000 genomes]
rs7680637	0.90[EUR][1000 genomes]
rs7685645	0.91[EUR][1000 genomes]
rs7694769	0.94[EUR][1000 genomes]
rs9307782	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv980406	chr4:82310479-82337709	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv517921	chr4:82315470-82346835	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10028610	PAQR3	cis	cerebellum	SCAN
rs10028610	C4orf11	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82316600-82321000	Enhancers	Fetal Intestine Large	intestine
2	chr4:82317000-82320800	Enhancers	Fetal Intestine Small	intestine

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