Variant report

Variant	rs62303573
Chromosome Location	chr4:82299527-82299528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10013788	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10021462	0.83[EUR][1000 genomes]
rs10028610	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11732090	0.86[EUR][1000 genomes]
rs11732106	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11733845	0.81[EUR][1000 genomes]
rs11736471	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11736583	0.88[ASN][1000 genomes]
rs11942269	0.81[EUR][1000 genomes]
rs12332030	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1377059	0.86[EUR][1000 genomes]
rs1452364	0.81[EUR][1000 genomes]
rs1452366	0.84[EUR][1000 genomes]
rs1551236	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17428097	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17428153	0.88[ASN][1000 genomes]
rs17499131	0.81[EUR][1000 genomes]
rs17500037	0.88[ASN][1000 genomes]
rs17500100	0.88[ASN][1000 genomes]
rs2034630	0.80[EUR][1000 genomes]
rs2903765	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4693234	0.82[EUR][1000 genomes]
rs6821450	0.87[EUR][1000 genomes]
rs6831114	0.80[EUR][1000 genomes]
rs6851443	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6853731	0.86[EUR][1000 genomes]
rs7660089	0.88[ASN][1000 genomes]
rs7680637	0.82[EUR][1000 genomes]
rs7685645	0.83[EUR][1000 genomes]
rs7694769	0.86[EUR][1000 genomes]
rs9307782	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829985	chr4:82199328-82353656	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1000585	chr4:82299388-82302779	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82297200-82303000	Enhancers	Fetal Intestine Small	intestine
2	chr4:82297800-82302800	Enhancers	Fetal Intestine Large	intestine
3	chr4:82298000-82300600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:82298400-82299800	Enhancers	Fetal Lung	lung
5	chr4:82298600-82300400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:82299200-82300600	Enhancers	Fetal Kidney	kidney
7	chr4:82299200-82300800	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr4:82299400-82300000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:82299400-82300000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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