Variant report

Variant	rs166677
Chromosome Location	chr7:86272294-86272295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs274614	0.89[YRI][hapmap]
rs274615	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs274616	0.82[AFR][1000 genomes]
rs274617	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs274620	0.93[YRI][hapmap];0.87[AFR][1000 genomes]
rs274621	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs274622	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs802431	0.82[YRI][hapmap]
rs802464	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86267000-86272600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:86269600-86272800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:86270000-86272600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:86271800-86272400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:86271800-86272400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:86271800-86272400	Enhancers	Brain Cingulate Gyrus	brain
7	chr7:86272000-86272600	Weak transcription	Brain Angular Gyrus	brain
8	chr7:86272000-86272600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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