Variant report

Variant	rs274615
Chromosome Location	chr7:86278937-86278938
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs166677	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs200839	0.82[AFR][1000 genomes]
rs274629	0.82[AFR][1000 genomes]
rs274633	0.82[AFR][1000 genomes]
rs274634	0.82[AFR][1000 genomes]
rs274636	0.81[AFR][1000 genomes]
rs802464	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025032	chr7:86032479-86642973	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv831053	chr7:86268171-86440999	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86274600-86283200	Weak transcription	Right Atrium	heart
2	chr7:86275400-86283200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:86277000-86280000	Weak transcription	Fetal Brain Male	brain
4	chr7:86277200-86280000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:86277200-86280000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:86277400-86279000	Enhancers	Brain Hippocampus Middle	brain
7	chr7:86277800-86279400	Enhancers	Brain Substantia Nigra	brain
8	chr7:86277800-86282400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:86278000-86279000	Enhancers	Brain Cingulate Gyrus	brain
10	chr7:86278000-86279400	Enhancers	Brain Angular Gyrus	brain
11	chr7:86278000-86280000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:86278000-86280600	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:86278400-86279400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:86278400-86279400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:86278400-86279400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:86278400-86279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:86278400-86279800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:86278400-86280000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:86278400-86280400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:86278400-86281000	Enhancers	Brain Anterior Caudate	brain
21	chr7:86278400-86283000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:86278400-86283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:86278800-86279200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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