Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11159695	0.82[EUR][1000 genomes]
rs1442575	0.99[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1449416	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1620072	0.87[YRI][hapmap];0.88[AFR][1000 genomes]
rs1626761	0.90[CEU][hapmap];0.98[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1667500	0.88[AFR][1000 genomes]
rs1667504	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs1767388	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1767390	0.83[ASN][1000 genomes]
rs1767392	0.83[ASN][1000 genomes]
rs1767395	0.84[AFR][1000 genomes]
rs1767399	0.88[AFR][1000 genomes]
rs1767425	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.97[LWK][hapmap];0.89[MKK][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1767426	0.91[ASW][hapmap];0.81[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2478802	0.83[ASN][1000 genomes]
rs55944941	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60564174	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74068476	0.80[EUR][1000 genomes]
rs74068485	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9323753	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3381198	chr14:85690248-85709087	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85695800-85707200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:85701200-85705000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:85701200-85707200	Weak transcription	HSMM	muscle
4	chr14:85701200-85707400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:85701200-85715200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:85701400-85704600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:85701400-85705200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr14:85701400-85707200	Weak transcription	Osteobl	bone
9	chr14:85701600-85703000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:85701600-85706200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:85701600-85707400	Weak transcription	NHEK	skin
12	chr14:85701800-85707200	Weak transcription	HMEC	breast
13	chr14:85702200-85703000	Enhancers	A549	lung
14	chr14:85702200-85703400	Enhancers	Dnd41	blood
15	chr14:85702600-85707200	Weak transcription	HUVEC	blood vessel

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