Variant report

Variant	rs9323753
Chromosome Location	chr14:85715587-85715588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1442575	0.88[AFR][1000 genomes]
rs1449416	0.87[AFR][1000 genomes]
rs1620072	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1626761	0.89[AFR][1000 genomes]
rs1667500	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1667510	0.87[AFR][1000 genomes]
rs1767388	0.88[AFR][1000 genomes]
rs1767395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1767399	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1767425	0.91[YRI][hapmap];0.84[AFR][1000 genomes]
rs1767426	0.86[YRI][hapmap];0.87[AFR][1000 genomes]
rs59655378	1.00[AMR][1000 genomes]
rs61098303	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7149400	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8007147	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv902168	chr14:85693904-85716792	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	esv2422273	chr14:85703149-85767292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85706200-85715600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:85708400-85716000	Weak transcription	Ovary	ovary
3	chr14:85709400-85718200	Weak transcription	HSMMtube	muscle
4	chr14:85714600-85716200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:85714600-85716800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr14:85714800-85717000	Enhancers	NHEK	skin
7	chr14:85715000-85715800	Enhancers	Fetal Heart	heart
8	chr14:85715000-85716600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:85715000-85717400	Enhancers	HMEC	breast
10	chr14:85715000-85717800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:85715200-85715800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:85715200-85716000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr14:85715200-85716000	Enhancers	Hela-S3	cervix
14	chr14:85715200-85716000	Enhancers	Osteobl	bone
15	chr14:85715200-85716200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr14:85715200-85716200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:85715200-85717400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr14:85715200-85719000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:85715400-85715600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:85715400-85716000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:85715400-85716200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:85715400-85716200	Enhancers	Fetal Muscle Leg	muscle
23	chr14:85715400-85717400	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr14:85715400-85717600	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:85715400-85717800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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