Variant report

Variant	rs1667749
Chromosome Location	chr3:24302780-24302781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24301681..24305392-chr3:24534206..24538059,6	K562	blood:
2	chr3:24298149..24300449-chr3:24302708..24304769,2	K562	blood:
3	chr3:24297598..24300449-chr3:24300690..24305218,5	K562	blood:

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7619292	0.84[AMR][1000 genomes]
rs826230	0.84[AMR][1000 genomes]
rs826231	0.83[AMR][1000 genomes]
rs826233	0.82[AMR][1000 genomes]
rs862247	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24295400-24306400	Weak transcription	HepG2	liver
2	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24299800-24304000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr3:24301000-24303200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:24301000-24303200	Weak transcription	Fetal Lung	lung
6	chr3:24301000-24304200	Weak transcription	Right Atrium	heart
7	chr3:24301000-24304600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:24301000-24305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:24301400-24304000	Enhancers	Fetal Intestine Large	intestine
10	chr3:24302000-24302800	Enhancers	Psoas Muscle	Psoas
11	chr3:24302000-24303400	Weak transcription	Fetal Heart	heart
12	chr3:24302000-24304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:24302200-24303400	Enhancers	Liver	Liver
14	chr3:24302200-24305600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr3:24302200-24305800	Enhancers	K562	blood
16	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
17	chr3:24302400-24303200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:24302400-24304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:24302600-24303000	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:24302600-24303800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr3:24302600-24306000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:24302600-24310800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr3:24302600-24312000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links