Variant report

Variant	rs7619292
Chromosome Location	chr3:24301157-24301158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24300206..24302334-chr3:24536691..24538229,2	MCF-7	breast:
2	chr3:24299984..24301754-chr3:24305650..24307661,2	K562	blood:
3	chr3:24296130..24297967-chr3:24299752..24301340,2	MCF-7	breast:
4	chr3:24297598..24300449-chr3:24300690..24305218,5	K562	blood:
5	chr3:24060176..24062310-chr3:24299277..24301761,2	K562	blood:
6	chr3:24298797..24301703-chr3:24554490..24556064,2	K562	blood:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1667749	0.84[AMR][1000 genomes]
rs826230	0.83[AMR][1000 genomes]
rs826231	0.82[AMR][1000 genomes]
rs826233	0.81[AMR][1000 genomes]
rs862247	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24272400-24301400	Weak transcription	Fetal Intestine Large	intestine
2	chr3:24295400-24306400	Weak transcription	HepG2	liver
3	chr3:24296800-24301400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:24298400-24301600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:24299800-24304000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr3:24300000-24301200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr3:24300000-24302200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr3:24300200-24301800	Weak transcription	Right Ventricle	heart
10	chr3:24300200-24302000	Enhancers	Fetal Heart	heart
11	chr3:24300400-24301200	Enhancers	Pancreas	Pancrea
12	chr3:24300600-24301400	Enhancers	K562	blood
13	chr3:24300600-24301800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:24300800-24301800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:24300800-24301800	Weak transcription	Gastric	stomach
16	chr3:24300800-24301800	Weak transcription	Left Ventricle	heart
17	chr3:24300800-24302000	Weak transcription	Psoas Muscle	Psoas
18	chr3:24300800-24302600	Enhancers	Colon Smooth Muscle	Colon
19	chr3:24300800-24302600	Enhancers	Fetal Intestine Small	intestine
20	chr3:24301000-24301200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:24301000-24301200	Active TSS	Stomach Smooth Muscle	stomach
22	chr3:24301000-24301400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:24301000-24301800	Weak transcription	Aorta	Aorta
24	chr3:24301000-24301800	Enhancers	Liver	Liver
25	chr3:24301000-24301800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr3:24301000-24302200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:24301000-24303200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:24301000-24303200	Weak transcription	Fetal Lung	lung
29	chr3:24301000-24304200	Weak transcription	Right Atrium	heart
30	chr3:24301000-24304600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:24301000-24305400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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