Variant report

Variant	rs167001
Chromosome Location	chr13:69227987-69227988
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1591433	0.94[YRI][hapmap]
rs287379	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs287380	0.83[AFR][1000 genomes]
rs287382	0.87[AFR][1000 genomes]
rs287383	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs287418	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs287419	0.83[AMR][1000 genomes]
rs287424	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs287428	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs287429	0.83[AMR][1000 genomes]
rs4884795	0.94[YRI][hapmap]
rs514086	0.83[AMR][1000 genomes]
rs525338	0.83[AMR][1000 genomes]
rs559881	0.83[AMR][1000 genomes]
rs678386	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900441	chr13:69218290-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900443	chr13:69226649-69249927	Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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