Variant report

Variant	rs287382
Chromosome Location	chr13:69228533-69228534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:69228505-69228846	HepG2	liver:	n/a	chr13:69228659-69228670 chr13:69228661-69228672
2	CEBPB	chr13:69228532-69228846	IMR90	lung:	n/a	chr13:69228659-69228670 chr13:69228661-69228672
3	JUN	chr13:69228482-69228649	K562	blood:	n/a	n/a

Variant related genes	Relation type
RPL12P34	TF binding region

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs287335	0.91[EUR][1000 genomes]
rs287379	0.97[AFR][1000 genomes]
rs287380	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs287383	0.99[AFR][1000 genomes]
rs378178	0.83[EUR][1000 genomes]
rs414259	0.91[EUR][1000 genomes]
rs470150	0.84[EUR][1000 genomes]
rs537778	0.84[EUR][1000 genomes]
rs665286	0.84[EUR][1000 genomes]
rs73200299	0.80[EUR][1000 genomes]
rs73201907	0.80[EUR][1000 genomes]
rs73201909	0.80[EUR][1000 genomes]
rs73206158	0.90[EUR][1000 genomes]
rs73206165	0.90[EUR][1000 genomes]
rs73206166	0.90[EUR][1000 genomes]
rs73206168	0.95[EUR][1000 genomes]
rs73206169	0.98[EUR][1000 genomes]
rs73206170	0.98[EUR][1000 genomes]
rs73206171	0.98[EUR][1000 genomes]
rs73206174	0.98[EUR][1000 genomes]
rs73206176	0.98[EUR][1000 genomes]
rs73206182	0.98[EUR][1000 genomes]
rs73206183	0.96[EUR][1000 genomes]
rs73206188	0.92[EUR][1000 genomes]
rs73206191	0.92[EUR][1000 genomes]
rs73206192	0.92[EUR][1000 genomes]
rs73206193	0.92[EUR][1000 genomes]
rs73206194	0.92[EUR][1000 genomes]
rs73206195	0.92[EUR][1000 genomes]
rs73206196	0.89[EUR][1000 genomes]
rs73206197	0.89[EUR][1000 genomes]
rs73206198	0.91[EUR][1000 genomes]
rs73206199	0.92[EUR][1000 genomes]
rs73206200	0.92[EUR][1000 genomes]
rs73206201	0.92[EUR][1000 genomes]
rs73207803	0.92[EUR][1000 genomes]
rs73207804	0.92[EUR][1000 genomes]
rs73207805	0.92[EUR][1000 genomes]
rs73207807	0.92[EUR][1000 genomes]
rs7350653	0.86[EUR][1000 genomes]
rs9317720	0.92[EUR][1000 genomes]
rs9317721	0.92[EUR][1000 genomes]
rs9317722	0.92[EUR][1000 genomes]
rs9529365	0.80[EUR][1000 genomes]
rs9529366	0.80[EUR][1000 genomes]
rs9529406	0.90[EUR][1000 genomes]
rs9529407	0.90[EUR][1000 genomes]
rs9529411	0.98[EUR][1000 genomes]
rs9529412	0.98[EUR][1000 genomes]
rs9529413	0.98[EUR][1000 genomes]
rs9529414	0.96[EUR][1000 genomes]
rs9529419	0.91[EUR][1000 genomes]
rs9529420	0.92[EUR][1000 genomes]
rs9529421	0.92[EUR][1000 genomes]
rs9529422	0.92[EUR][1000 genomes]
rs9529423	0.89[EUR][1000 genomes]
rs9529424	0.92[EUR][1000 genomes]
rs9541432	0.80[EUR][1000 genomes]
rs9541433	0.80[EUR][1000 genomes]
rs9541441	0.84[EUR][1000 genomes]
rs9541451	0.84[EUR][1000 genomes]
rs9541458	0.91[EUR][1000 genomes]
rs9541483	0.96[EUR][1000 genomes]
rs9541496	0.90[EUR][1000 genomes]
rs9541497	0.90[EUR][1000 genomes]
rs9541498	0.90[EUR][1000 genomes]
rs9541499	0.90[EUR][1000 genomes]
rs9541500	0.90[EUR][1000 genomes]
rs9541501	0.90[EUR][1000 genomes]
rs9541502	0.90[EUR][1000 genomes]
rs9541503	0.98[EUR][1000 genomes]
rs9541504	0.94[EUR][1000 genomes]
rs9541505	0.95[EUR][1000 genomes]
rs9541506	0.98[EUR][1000 genomes]
rs9541507	0.98[EUR][1000 genomes]
rs9541508	0.98[EUR][1000 genomes]
rs9541509	0.98[EUR][1000 genomes]
rs9541510	0.98[EUR][1000 genomes]
rs9541511	0.98[EUR][1000 genomes]
rs9541513	0.96[EUR][1000 genomes]
rs9541514	0.96[EUR][1000 genomes]
rs9541515	0.96[EUR][1000 genomes]
rs9541522	0.92[EUR][1000 genomes]
rs9541525	0.92[EUR][1000 genomes]
rs9541526	0.92[EUR][1000 genomes]
rs9541527	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900441	chr13:69218290-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900443	chr13:69226649-69249927	Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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