Variant report

Variant	rs9541502
Chromosome Location	chr13:69266922-69266923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 195 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs287335	0.81[EUR][1000 genomes]
rs287377	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs287380	0.90[EUR][1000 genomes]
rs287382	0.90[EUR][1000 genomes]
rs287408	0.88[CEU][hapmap]
rs287411	0.89[CEU][hapmap]
rs414259	0.81[EUR][1000 genomes]
rs4884795	1.00[CEU][hapmap]
rs73206158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206168	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73206169	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206170	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206171	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206174	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206176	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206182	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206183	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73206188	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206191	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206192	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206193	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206194	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206195	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206196	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73206197	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73206198	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73206199	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206200	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206201	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207803	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207804	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207805	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207807	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7350653	0.88[AMR][1000 genomes]
rs9317720	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9317721	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9317722	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529399	0.85[CEU][hapmap]
rs9529406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529411	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529413	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529414	0.90[EUR][1000 genomes]
rs9529419	0.85[EUR][1000 genomes]
rs9529420	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529421	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529422	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529423	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9529424	0.86[EUR][1000 genomes]
rs9541458	0.81[EUR][1000 genomes]
rs9541483	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9541496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541500	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541503	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541504	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541505	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541506	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541507	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541508	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541509	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541510	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541513	0.90[EUR][1000 genomes]
rs9541514	0.90[EUR][1000 genomes]
rs9541515	0.90[EUR][1000 genomes]
rs9541522	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541525	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541526	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541527	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:119 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900441	chr13:69218290-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900444	chr13:69233599-69380036	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1043903	chr13:69234019-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1078	chr13:69234473-69287002	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1051459	chr13:69234903-69268230	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047512	chr13:69235646-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv437167	chr13:69238288-69272157	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv900445	chr13:69240180-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900446	chr13:69240180-69328753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv562155	chr13:69240723-69267981	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv562156	chr13:69240723-69268203	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	esv1830380	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv562157	chr13:69240723-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv900447	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1833493	chr13:69240723-69272813	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv562159	chr13:69240945-69267981	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv562160	chr13:69240945-69268203	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv562161	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv900448	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv562162	chr13:69240945-69272813	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv900449	chr13:69240945-69282276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv562163	chr13:69240945-69302618	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv1829230	chr13:69242067-69268230	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv1050945	chr13:69242067-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv1038267	chr13:69242067-69269595	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
29	esv1825203	chr13:69242079-69268242	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv2761300	chr13:69242079-69268242	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
31	esv2760290	chr13:69242079-69270692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1825026	chr13:69242179-69268242	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	esv1803486	chr13:69243856-69267580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1832359	chr13:69243856-69267580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
35	esv1825091	chr13:69243856-69269821	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv3512252	chr13:69244557-69268889	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
37	esv3512263	chr13:69244585-69268842	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
38	esv3512274	chr13:69244604-69268865	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
39	esv3512241	chr13:69244634-69268820	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
40	esv3512286	chr13:69244703-69268758	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
41	esv16721	chr13:69244710-69268730	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	esv1825271	chr13:69246026-69269735	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	esv1830703	chr13:69246226-69271956	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
44	nsv983743	chr13:69246304-69269576	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
45	esv1825010	chr13:69247022-69268203	Flanking Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
46	esv1827002	chr13:69247022-69268203	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
47	esv1827966	chr13:69247022-69268203	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
48	esv1832942	chr13:69247022-69268203	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
49	nsv1048218	chr13:69248299-69268230	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
50	esv1830581	chr13:69248299-69268242	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69262600-69282600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:69266800-69272400	Weak transcription	K562	blood

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