Variant report

Variant	rs9541458
Chromosome Location	chr13:69171697-69171698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs287335	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs287377	0.89[CEU][hapmap]
rs287380	0.91[EUR][1000 genomes]
rs287382	0.91[EUR][1000 genomes]
rs287408	1.00[CEU][hapmap]
rs287411	1.00[CEU][hapmap]
rs378178	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs414259	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs470150	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4884795	0.90[CEU][hapmap]
rs537778	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs665286	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73198068	0.82[EUR][1000 genomes]
rs73198089	0.84[EUR][1000 genomes]
rs73200299	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73201907	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73201909	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73206158	0.81[EUR][1000 genomes]
rs73206165	0.81[EUR][1000 genomes]
rs73206166	0.81[EUR][1000 genomes]
rs73206168	0.86[EUR][1000 genomes]
rs73206169	0.89[EUR][1000 genomes]
rs73206170	0.89[EUR][1000 genomes]
rs73206171	0.89[EUR][1000 genomes]
rs73206174	0.89[EUR][1000 genomes]
rs73206176	0.89[EUR][1000 genomes]
rs73206182	0.89[EUR][1000 genomes]
rs73206183	0.87[EUR][1000 genomes]
rs73206188	0.84[EUR][1000 genomes]
rs73206191	0.84[EUR][1000 genomes]
rs73206192	0.84[EUR][1000 genomes]
rs73206193	0.84[EUR][1000 genomes]
rs73206194	0.84[EUR][1000 genomes]
rs73206195	0.84[EUR][1000 genomes]
rs73206198	0.82[EUR][1000 genomes]
rs73206199	0.84[EUR][1000 genomes]
rs73206200	0.84[EUR][1000 genomes]
rs73206201	0.84[EUR][1000 genomes]
rs73207803	0.84[EUR][1000 genomes]
rs73207804	0.84[EUR][1000 genomes]
rs73207805	0.84[EUR][1000 genomes]
rs73207807	0.84[EUR][1000 genomes]
rs9317720	0.84[EUR][1000 genomes]
rs9317721	0.84[EUR][1000 genomes]
rs9317722	0.84[EUR][1000 genomes]
rs9529350	0.82[EUR][1000 genomes]
rs9529365	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9529366	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9529399	1.00[CEU][hapmap]
rs9529406	0.81[EUR][1000 genomes]
rs9529407	0.81[EUR][1000 genomes]
rs9529411	0.89[EUR][1000 genomes]
rs9529412	0.89[EUR][1000 genomes]
rs9529413	0.89[EUR][1000 genomes]
rs9529414	0.87[EUR][1000 genomes]
rs9529419	0.82[EUR][1000 genomes]
rs9529420	0.84[EUR][1000 genomes]
rs9529421	0.84[EUR][1000 genomes]
rs9529422	0.84[EUR][1000 genomes]
rs9529423	0.80[EUR][1000 genomes]
rs9529424	0.84[EUR][1000 genomes]
rs9541431	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9541432	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9541433	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9541441	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9541451	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9541483	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541496	0.81[EUR][1000 genomes]
rs9541497	0.81[EUR][1000 genomes]
rs9541498	0.81[EUR][1000 genomes]
rs9541499	0.81[EUR][1000 genomes]
rs9541500	0.81[EUR][1000 genomes]
rs9541501	0.81[EUR][1000 genomes]
rs9541502	0.81[EUR][1000 genomes]
rs9541503	0.89[EUR][1000 genomes]
rs9541504	0.85[EUR][1000 genomes]
rs9541505	0.86[EUR][1000 genomes]
rs9541506	0.89[EUR][1000 genomes]
rs9541507	0.89[EUR][1000 genomes]
rs9541508	0.89[EUR][1000 genomes]
rs9541509	0.89[EUR][1000 genomes]
rs9541510	0.89[EUR][1000 genomes]
rs9541511	0.89[EUR][1000 genomes]
rs9541513	0.87[EUR][1000 genomes]
rs9541514	0.87[EUR][1000 genomes]
rs9541515	0.87[EUR][1000 genomes]
rs9541522	0.84[EUR][1000 genomes]
rs9541525	0.84[EUR][1000 genomes]
rs9541526	0.84[EUR][1000 genomes]
rs9541527	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042249	chr13:68960954-69175674	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv528660	chr13:68981659-69205918	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1047573	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv541827	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1040959	chr13:69003437-69199511	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1048225	chr13:69003437-69200522	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050299	chr13:69159723-69201233	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69170600-69172600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:69171400-69171800	Weak transcription	Fetal Heart	heart

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