Variant report

Variant	rs73198089
Chromosome Location	chr13:69079356-69079357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs287335	0.84[EUR][1000 genomes]
rs414259	0.81[EUR][1000 genomes]
rs470150	0.91[EUR][1000 genomes]
rs537778	0.91[EUR][1000 genomes]
rs665286	0.91[EUR][1000 genomes]
rs73198068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73200299	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73201907	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73201909	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73206165	1.00[AFR][1000 genomes]
rs73206166	1.00[AFR][1000 genomes]
rs73206168	1.00[AFR][1000 genomes]
rs73206170	1.00[AFR][1000 genomes]
rs73206171	1.00[AFR][1000 genomes]
rs9529350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9529365	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9529366	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9529406	1.00[AFR][1000 genomes]
rs9529407	1.00[AFR][1000 genomes]
rs9541431	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9541432	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9541433	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9541441	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9541451	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9541458	0.84[EUR][1000 genomes]
rs9541483	1.00[AFR][1000 genomes]
rs9541496	1.00[AFR][1000 genomes]
rs9541497	1.00[AFR][1000 genomes]
rs9541498	1.00[AFR][1000 genomes]
rs9541500	1.00[AFR][1000 genomes]
rs9541501	1.00[AFR][1000 genomes]
rs9541503	1.00[AFR][1000 genomes]
rs9541504	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036625	chr13:68670956-69104430	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541826	chr13:68670956-69104430	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900437	chr13:68949326-69129159	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1042249	chr13:68960954-69175674	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528660	chr13:68981659-69205918	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1047573	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv541827	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1040959	chr13:69003437-69199511	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1048225	chr13:69003437-69200522	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1039787	chr13:69017796-69138765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69078800-69081200	Weak transcription	Pancreas	Pancrea

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