Variant report

Variant	rs73198068
Chromosome Location	chr13:69055889-69055890
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs287335	0.82[EUR][1000 genomes]
rs470150	0.89[EUR][1000 genomes]
rs537778	0.89[EUR][1000 genomes]
rs665286	0.89[EUR][1000 genomes]
rs73198089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73200299	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73201907	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73201909	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9529350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529365	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9529366	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9541431	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9541432	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9541433	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9541441	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9541451	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9541458	0.82[EUR][1000 genomes]
rs9541483	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036625	chr13:68670956-69104430	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541826	chr13:68670956-69104430	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900437	chr13:68949326-69129159	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1042249	chr13:68960954-69175674	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528660	chr13:68981659-69205918	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1047573	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv541827	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900439	chr13:68992615-69061685	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1040959	chr13:69003437-69199511	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1048225	chr13:69003437-69200522	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1039787	chr13:69017796-69138765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv2763035	chr13:69049139-69078564	Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv1046136	chr13:69051662-69070011	Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69054600-69056000	Enhancers	Ovary	ovary
2	chr13:69055000-69056200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:69055400-69056200	Enhancers	Fetal Heart	heart
4	chr13:69055600-69056000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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