Variant report

Variant	rs9541431
Chromosome Location	chr13:69124418-69124419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs287335	0.82[EUR][1000 genomes]
rs287377	0.89[CEU][hapmap]
rs287408	1.00[CEU][hapmap]
rs287411	1.00[CEU][hapmap]
rs470150	0.89[EUR][1000 genomes]
rs4884795	0.89[CEU][hapmap]
rs537778	0.89[EUR][1000 genomes]
rs665286	0.89[EUR][1000 genomes]
rs73198068	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs73198089	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs73200299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73201907	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73201909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73206165	1.00[AFR][1000 genomes]
rs73206166	1.00[AFR][1000 genomes]
rs73206168	1.00[AFR][1000 genomes]
rs73206170	1.00[AFR][1000 genomes]
rs73206171	1.00[AFR][1000 genomes]
rs73206176	1.00[AFR][1000 genomes]
rs73206182	1.00[AFR][1000 genomes]
rs73206183	1.00[AFR][1000 genomes]
rs73206188	1.00[AFR][1000 genomes]
rs73206191	1.00[AFR][1000 genomes]
rs73206192	1.00[AFR][1000 genomes]
rs73206193	1.00[AFR][1000 genomes]
rs73206194	1.00[AFR][1000 genomes]
rs73206198	1.00[AFR][1000 genomes]
rs73206199	1.00[AFR][1000 genomes]
rs73206200	1.00[AFR][1000 genomes]
rs73206201	1.00[AFR][1000 genomes]
rs73207803	1.00[AFR][1000 genomes]
rs73207804	1.00[AFR][1000 genomes]
rs73207805	1.00[AFR][1000 genomes]
rs73207807	1.00[AFR][1000 genomes]
rs9317720	1.00[AFR][1000 genomes]
rs9317721	1.00[AFR][1000 genomes]
rs9317722	1.00[AFR][1000 genomes]
rs9529350	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9529365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9529366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9529399	1.00[CEU][hapmap]
rs9529406	1.00[AFR][1000 genomes]
rs9529407	1.00[AFR][1000 genomes]
rs9529411	1.00[AFR][1000 genomes]
rs9529412	1.00[AFR][1000 genomes]
rs9529413	1.00[AFR][1000 genomes]
rs9529419	1.00[AFR][1000 genomes]
rs9529420	1.00[AFR][1000 genomes]
rs9529421	1.00[AFR][1000 genomes]
rs9529422	1.00[AFR][1000 genomes]
rs9529423	1.00[AFR][1000 genomes]
rs9541432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9541433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9541441	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9541451	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9541458	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9541483	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs9541496	1.00[AFR][1000 genomes]
rs9541497	1.00[AFR][1000 genomes]
rs9541498	1.00[AFR][1000 genomes]
rs9541500	1.00[AFR][1000 genomes]
rs9541501	1.00[AFR][1000 genomes]
rs9541503	1.00[AFR][1000 genomes]
rs9541504	1.00[AFR][1000 genomes]
rs9541505	1.00[AFR][1000 genomes]
rs9541506	1.00[AFR][1000 genomes]
rs9541507	1.00[AFR][1000 genomes]
rs9541508	1.00[AFR][1000 genomes]
rs9541509	1.00[AFR][1000 genomes]
rs9541510	1.00[AFR][1000 genomes]
rs9541511	1.00[AFR][1000 genomes]
rs9541522	1.00[AFR][1000 genomes]
rs9541525	1.00[AFR][1000 genomes]
rs9541526	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900437	chr13:68949326-69129159	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1042249	chr13:68960954-69175674	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv528660	chr13:68981659-69205918	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1047573	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv541827	chr13:68983862-69177639	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1040959	chr13:69003437-69199511	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1048225	chr13:69003437-69200522	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1039787	chr13:69017796-69138765	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69124000-69124800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:69124000-69126400	Enhancers	Fetal Heart	heart

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