Variant report

Variant	rs73206169
Chromosome Location	chr13:69269806-69269807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:69266497..69268743-chr13:69269469..69272027,2	MCF-7	breast:
2	chr13:69269070..69271450-chr13:69274161..69276898,2	K562	blood:

Variant related genes	Relation type
ENSG00000243671	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs287335	0.89[EUR][1000 genomes]
rs287380	0.98[EUR][1000 genomes]
rs287382	0.98[EUR][1000 genomes]
rs378178	0.81[EUR][1000 genomes]
rs414259	0.89[EUR][1000 genomes]
rs470150	0.82[EUR][1000 genomes]
rs537778	0.82[EUR][1000 genomes]
rs665286	0.82[EUR][1000 genomes]
rs73206158	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206165	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206166	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206168	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73206170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206183	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73206188	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206191	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206192	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206193	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206194	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206195	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206196	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206197	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206198	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73206199	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206200	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73206201	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73207803	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73207804	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73207805	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73207807	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7350653	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9317720	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9317721	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9317722	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9529406	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529407	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529411	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529414	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9529419	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9529420	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9529421	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9529422	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9529423	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529424	0.94[EUR][1000 genomes]
rs9541441	0.82[EUR][1000 genomes]
rs9541451	0.82[EUR][1000 genomes]
rs9541458	0.89[EUR][1000 genomes]
rs9541483	0.94[EUR][1000 genomes]
rs9541496	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541497	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541498	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541499	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541500	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541501	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541502	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541504	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9541505	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9541506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541507	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541509	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541511	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541513	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541514	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541515	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9541522	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541525	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541526	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9541527	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900441	chr13:69218290-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv900444	chr13:69233599-69380036	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1078	chr13:69234473-69287002	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv437167	chr13:69238288-69272157	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv900445	chr13:69240180-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900446	chr13:69240180-69328753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv1830380	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv562157	chr13:69240723-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900447	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv1833493	chr13:69240723-69272813	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv562161	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv900448	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv562162	chr13:69240945-69272813	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv900449	chr13:69240945-69282276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv562163	chr13:69240945-69302618	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	esv2760290	chr13:69242079-69270692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	esv1825091	chr13:69243856-69269821	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	esv1830703	chr13:69246226-69271956	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv1833332	chr13:69248299-69270321	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv562175	chr13:69249927-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1826861	chr13:69249927-69272813	Flanking Active TSS Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv562176	chr13:69249927-69272813	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv900450	chr13:69249927-69361505	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
28	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv1831910	chr13:69251505-69270340	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv510610	chr13:69256642-69270980	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69262600-69282600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:69266800-69272400	Weak transcription	K562	blood

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