Variant report

Variant	rs9541527
Chromosome Location	chr13:69323160-69323161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs287335	0.84[EUR][1000 genomes]
rs287377	1.00[CEU][hapmap]
rs287380	0.92[EUR][1000 genomes]
rs287382	0.92[EUR][1000 genomes]
rs287408	0.89[CEU][hapmap]
rs287411	0.90[CEU][hapmap]
rs414259	0.84[EUR][1000 genomes]
rs470150	0.80[EUR][1000 genomes]
rs4884795	1.00[CEU][hapmap]
rs537778	0.80[EUR][1000 genomes]
rs665286	0.80[EUR][1000 genomes]
rs73206158	0.86[EUR][1000 genomes]
rs73206165	0.86[EUR][1000 genomes]
rs73206166	0.86[EUR][1000 genomes]
rs73206168	0.91[EUR][1000 genomes]
rs73206169	0.94[EUR][1000 genomes]
rs73206170	0.94[EUR][1000 genomes]
rs73206171	0.94[EUR][1000 genomes]
rs73206174	0.94[EUR][1000 genomes]
rs73206176	0.94[EUR][1000 genomes]
rs73206182	0.94[EUR][1000 genomes]
rs73206183	0.96[EUR][1000 genomes]
rs73206188	1.00[EUR][1000 genomes]
rs73206191	1.00[EUR][1000 genomes]
rs73206192	1.00[EUR][1000 genomes]
rs73206193	1.00[EUR][1000 genomes]
rs73206194	1.00[EUR][1000 genomes]
rs73206195	1.00[EUR][1000 genomes]
rs73206196	0.96[EUR][1000 genomes]
rs73206197	0.96[EUR][1000 genomes]
rs73206198	0.98[EUR][1000 genomes]
rs73206199	1.00[EUR][1000 genomes]
rs73206200	1.00[EUR][1000 genomes]
rs73206201	1.00[EUR][1000 genomes]
rs73207803	1.00[EUR][1000 genomes]
rs73207804	1.00[EUR][1000 genomes]
rs73207805	1.00[EUR][1000 genomes]
rs73207807	1.00[EUR][1000 genomes]
rs7350653	0.93[EUR][1000 genomes]
rs9317720	1.00[EUR][1000 genomes]
rs9317721	1.00[EUR][1000 genomes]
rs9317722	1.00[EUR][1000 genomes]
rs9529399	0.86[CEU][hapmap]
rs9529406	0.86[EUR][1000 genomes]
rs9529407	0.86[EUR][1000 genomes]
rs9529411	0.94[EUR][1000 genomes]
rs9529412	0.94[EUR][1000 genomes]
rs9529413	0.94[EUR][1000 genomes]
rs9529414	0.96[EUR][1000 genomes]
rs9529419	0.98[EUR][1000 genomes]
rs9529420	1.00[EUR][1000 genomes]
rs9529421	1.00[EUR][1000 genomes]
rs9529422	1.00[EUR][1000 genomes]
rs9529423	0.96[EUR][1000 genomes]
rs9529424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541441	0.80[EUR][1000 genomes]
rs9541451	0.80[EUR][1000 genomes]
rs9541458	0.84[EUR][1000 genomes]
rs9541483	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9541496	0.86[EUR][1000 genomes]
rs9541497	0.86[EUR][1000 genomes]
rs9541498	0.86[EUR][1000 genomes]
rs9541499	0.86[EUR][1000 genomes]
rs9541500	0.86[EUR][1000 genomes]
rs9541501	0.86[EUR][1000 genomes]
rs9541502	0.86[EUR][1000 genomes]
rs9541503	0.94[EUR][1000 genomes]
rs9541504	0.91[EUR][1000 genomes]
rs9541505	0.91[EUR][1000 genomes]
rs9541506	0.94[EUR][1000 genomes]
rs9541507	0.94[EUR][1000 genomes]
rs9541508	0.94[EUR][1000 genomes]
rs9541509	0.94[EUR][1000 genomes]
rs9541510	0.94[EUR][1000 genomes]
rs9541511	0.94[EUR][1000 genomes]
rs9541513	0.96[EUR][1000 genomes]
rs9541514	0.96[EUR][1000 genomes]
rs9541515	0.96[EUR][1000 genomes]
rs9541522	1.00[EUR][1000 genomes]
rs9541525	1.00[EUR][1000 genomes]
rs9541526	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900444	chr13:69233599-69380036	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv900446	chr13:69240180-69328753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900450	chr13:69249927-69361505	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1038918	chr13:69251052-69919763	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv541829	chr13:69251052-69919763	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv900451	chr13:69290386-69387266	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69322400-69324400	Enhancers	HUVEC	blood vessel
2	chr13:69322800-69323200	Weak transcription	Hela-S3	cervix

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