Variant report

Variant	rs9541499
Chromosome Location	chr13:69261072-69261073
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:69258923..69261156-chr13:69263100..69265480,2	K562	blood:
2	chr13:69259973..69261382-chr13:69319364..69320393,8	MCF-7	breast:
3	chr13:69259897..69261382-chr13:69319281..69320393,15	MCF-7	breast:
4	chr13:69258057..69262640-chr13:69318281..69322115,7	MCF-7	breast:
5	chr13:69260117..69261169-chr13:69319440..69320437,6	MCF-7	breast:
6	chr13:69259880..69261273-chr13:69319408..69320273,7	MCF-7	breast:

Extended variants
information (count: 258 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs287335	0.81[EUR][1000 genomes]
rs287377	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs287380	0.90[EUR][1000 genomes]
rs287382	0.90[EUR][1000 genomes]
rs414259	0.81[EUR][1000 genomes]
rs73206158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73206168	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73206169	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206170	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206171	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206174	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206176	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206182	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73206183	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73206188	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206191	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206192	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206193	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206194	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206195	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206196	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73206197	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73206198	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73206199	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206200	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73206201	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207803	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207804	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207805	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73207807	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7350653	0.88[AMR][1000 genomes]
rs9317720	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9317721	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9317722	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529399	0.85[CEU][hapmap]
rs9529406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9529411	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529412	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529413	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9529414	0.90[EUR][1000 genomes]
rs9529419	0.85[EUR][1000 genomes]
rs9529420	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529421	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529422	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9529423	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9529424	0.86[EUR][1000 genomes]
rs9541458	0.81[EUR][1000 genomes]
rs9541483	0.86[EUR][1000 genomes]
rs9541496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541500	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9541503	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541504	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541505	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9541506	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541507	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541508	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541509	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541510	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541511	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9541513	0.90[EUR][1000 genomes]
rs9541514	0.90[EUR][1000 genomes]
rs9541515	0.90[EUR][1000 genomes]
rs9541522	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541525	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541526	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9541527	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:185 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900440	chr13:69171580-69282276	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv900441	chr13:69218290-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900442	chr13:69223307-69387266	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv471144	chr13:69230857-69261811	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900444	chr13:69233599-69380036	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1043903	chr13:69234019-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1078	chr13:69234473-69287002	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1051459	chr13:69234903-69268230	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1047512	chr13:69235646-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv437167	chr13:69238288-69272157	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv562149	chr13:69238595-69263738	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1049303	chr13:69238676-69923558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv562150	chr13:69238845-69263738	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv455938	chr13:69239914-69261812	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv562151	chr13:69239914-69261812	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv562152	chr13:69239914-69263738	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv900445	chr13:69240180-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv900446	chr13:69240180-69328753	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv562154	chr13:69240723-69263738	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv562155	chr13:69240723-69267981	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv562156	chr13:69240723-69268203	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv1830380	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv562157	chr13:69240723-69272157	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv900447	chr13:69240723-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	esv1833493	chr13:69240723-69272813	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	esv32770	chr13:69240940-69265551	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv516956	chr13:69240945-69261812	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv562158	chr13:69240945-69263738	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv562159	chr13:69240945-69267981	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv562160	chr13:69240945-69268203	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv562161	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
32	nsv900448	chr13:69240945-69272157	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv562162	chr13:69240945-69272813	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv900449	chr13:69240945-69282276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv562163	chr13:69240945-69302618	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
36	esv1830862	chr13:69241415-69265736	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv1040166	chr13:69242067-69264673	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
38	esv1829230	chr13:69242067-69268230	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
39	nsv1050945	chr13:69242067-69268230	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
40	nsv1038267	chr13:69242067-69269595	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
41	esv1825203	chr13:69242079-69268242	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
42	esv2761300	chr13:69242079-69268242	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
43	esv2760290	chr13:69242079-69270692	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
44	esv1825026	chr13:69242179-69268242	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
45	esv1803486	chr13:69243856-69267580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
46	esv1832359	chr13:69243856-69267580	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
47	esv1825091	chr13:69243856-69269821	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
48	esv1827134	chr13:69244119-69265736	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv9086	chr13:69244129-69265182	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
50	esv3512252	chr13:69244557-69268889	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:69260200-69264600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr13:69260600-69261400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:69260600-69262800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:69260800-69262200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:69260800-69262200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:69260800-69262200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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