Variant report

Variant	rs1672384
Chromosome Location	chr3:101631940-101631941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1672376	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1672377	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1672379	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1672382	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1672383	0.82[ASN][1000 genomes]
rs1707600	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1707610	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1707620	0.80[AMR][1000 genomes]
rs2925329	0.97[ASN][1000 genomes]
rs2942717	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2943301	1.00[YRI][hapmap]
rs606407	0.91[ASN][1000 genomes]
rs635268	1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]
rs771572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs796417	0.97[ASN][1000 genomes]
rs797867	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101621200-101633600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:101621600-101632800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:101623000-101632200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:101631200-101633200	Enhancers	NHEK	skin
5	chr3:101631400-101633000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:101631400-101633200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:101631400-101633200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:101631600-101632400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:101631600-101633000	Enhancers	HMEC	breast
10	chr3:101631600-101633200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:101631800-101632400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:101631800-101633200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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