Variant report

Variant	rs796417
Chromosome Location	chr3:101617581-101617582
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1672376	0.94[ASN][1000 genomes]
rs1672377	0.85[ASN][1000 genomes]
rs1672379	0.95[ASN][1000 genomes]
rs1672382	0.97[ASN][1000 genomes]
rs1672384	0.97[ASN][1000 genomes]
rs1707600	0.88[ASN][1000 genomes]
rs1707610	0.90[ASN][1000 genomes]
rs2925329	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2942717	0.88[ASN][1000 genomes]
rs606407	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs635268	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs771572	0.88[ASN][1000 genomes]
rs797867	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497784	chr3:101315009-102092989	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv3351469	chr3:101511702-101866448	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1010762	chr3:101584836-101803821	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101615200-101620800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr3:101616600-101619000	Enhancers	Primary B cells from cord blood	blood
3	chr3:101616600-101619000	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:101616600-101619400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:101616600-101619800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:101616800-101618000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr3:101616800-101618400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:101617000-101621000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:101617400-101617800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr3:101617400-101617800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:101617400-101618000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:101617400-101618400	Flanking Active TSS	GM12878-XiMat	blood
13	chr3:101617400-101619000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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