Variant report

Variant	rs1672412
Chromosome Location	chr15:31495047-31495048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12907310	0.87[EUR][1000 genomes]
rs1863279	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1865871	0.80[EUR][1000 genomes]
rs1978801	0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2164565	0.85[AMR][1000 genomes]
rs278357	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs278358	0.82[EUR][1000 genomes]
rs28658479	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2879263	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4779838	0.80[EUR][1000 genomes]
rs4779839	0.83[EUR][1000 genomes]
rs7166174	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31489600-31495400	Enhancers	Fetal Thymus	thymus
2	chr15:31489800-31495400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:31489800-31497000	Weak transcription	Lung	lung
4	chr15:31491800-31495400	Enhancers	Thymus	Thymus
5	chr15:31492000-31496000	Enhancers	GM12878-XiMat	blood
6	chr15:31492800-31496000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr15:31492800-31496000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr15:31493200-31496800	Weak transcription	Esophagus	oesophagus
9	chr15:31493400-31495200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:31493400-31495600	Weak transcription	Colon Smooth Muscle	Colon
11	chr15:31493400-31495800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:31493800-31496800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:31494400-31496000	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:31494400-31496200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr15:31494400-31496400	Enhancers	Dnd41	blood
16	chr15:31494600-31495800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:31494600-31496000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:31494600-31496200	Enhancers	Primary T cells from cord blood	blood
19	chr15:31494600-31496200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr15:31494600-31496200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr15:31494800-31495200	Bivalent Enhancer	HepG2	liver
22	chr15:31494800-31495600	Enhancers	Fetal Intestine Large	intestine
23	chr15:31494800-31496000	Enhancers	Brain Angular Gyrus	brain
24	chr15:31494800-31496200	Enhancers	Brain Hippocampus Middle	brain
25	chr15:31494800-31496600	Enhancers	Brain Cingulate Gyrus	brain
26	chr15:31494800-31497200	Enhancers	Liver	Liver
27	chr15:31495000-31495600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr15:31495000-31495600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:31495000-31495800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:31495000-31495800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr15:31495000-31495800	Bivalent Enhancer	Fetal Stomach	stomach
32	chr15:31495000-31496000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr15:31495000-31496200	Enhancers	Brain Substantia Nigra	brain
34	chr15:31495000-31496400	Enhancers	Brain Inferior Temporal Lobe	brain

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