Variant report

Variant	rs2879263
Chromosome Location	chr15:31506315-31506316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1672412	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1863279	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1978801	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2164565	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs278357	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28658479	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531138	chr15:30653877-31609679	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
5	nsv1036018	chr15:31140415-31544888	Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	nsv1052722	chr15:31261834-31609680	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv542315	chr15:31261834-31609680	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
9	nsv903836	chr15:31330280-31512652	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
10	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
12	nsv903839	chr15:31495113-31576677	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31495600-31506600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr15:31499800-31506600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:31500400-31506400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr15:31500400-31506600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:31501400-31506400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr15:31501800-31506400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:31501800-31506600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:31501800-31507200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:31502000-31506400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr15:31502000-31506800	Weak transcription	Right Ventricle	heart
11	chr15:31503000-31506400	Enhancers	Fetal Thymus	thymus
12	chr15:31503800-31506400	Weak transcription	Esophagus	oesophagus
13	chr15:31503800-31507200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr15:31503800-31507200	Weak transcription	Aorta	Aorta
15	chr15:31504000-31507600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:31504000-31507800	Enhancers	Placenta	Placenta
17	chr15:31504200-31506600	Enhancers	Thymus	Thymus
18	chr15:31504400-31507800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr15:31504800-31506400	Weak transcription	Primary B cells from cord blood	blood
20	chr15:31504800-31506600	Weak transcription	Lung	lung
21	chr15:31504800-31506800	Weak transcription	Left Ventricle	heart
22	chr15:31505000-31506600	Weak transcription	Brain Germinal Matrix	brain
23	chr15:31505000-31506600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:31505000-31506800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr15:31505000-31506800	Weak transcription	Colon Smooth Muscle	Colon
26	chr15:31505000-31507200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:31505000-31507200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:31505200-31506600	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:31505200-31506600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr15:31505400-31506400	Weak transcription	Liver	Liver
31	chr15:31505400-31506400	Weak transcription	GM12878-XiMat	blood
32	chr15:31505400-31506600	Weak transcription	Fetal Heart	heart
33	chr15:31505400-31506600	Weak transcription	Right Atrium	heart
34	chr15:31505400-31506800	Weak transcription	NHEK	skin
35	chr15:31505600-31506600	Weak transcription	Primary T cells from cord blood	blood
36	chr15:31505600-31506600	Weak transcription	Adipose Nuclei	Adipose
37	chr15:31505600-31506600	Weak transcription	Stomach Mucosa	stomach
38	chr15:31505600-31506800	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:31505600-31506800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:31505600-31507200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:31505800-31507200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:31506000-31506400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:31506000-31506400	Weak transcription	Hela-S3	cervix
44	chr15:31506200-31507200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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