Variant report

Variant	rs167873
Chromosome Location	chr18:44202556-44202557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:44135436..44136162-chr18:44202443..44203534,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs328123	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs328124	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs328130	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs328188	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328191	0.82[EUR][1000 genomes]
rs658951	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44199200-44203200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:44199200-44203200	Weak transcription	HMEC	breast
3	chr18:44199800-44202600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:44200800-44203200	Enhancers	Dnd41	blood
5	chr18:44200800-44204800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr18:44201000-44202800	Weak transcription	Lung	lung
7	chr18:44201000-44204800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr18:44201200-44203400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr18:44201200-44206000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr18:44201400-44202800	Weak transcription	Fetal Brain Male	brain
11	chr18:44201600-44202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr18:44201600-44203400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr18:44201800-44202800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr18:44201800-44202800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr18:44201800-44202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr18:44202000-44203000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr18:44202000-44203800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr18:44202200-44202600	Weak transcription	Primary T cells from cord blood	blood
19	chr18:44202200-44203200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr18:44202400-44202800	Weak transcription	Thymus	Thymus
21	chr18:44202400-44206000	Enhancers	Spleen	Spleen

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