Variant report

Variant	rs1679808
Chromosome Location	chr14:56491144-56491145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11845096	0.84[ASN][1000 genomes]
rs241544	0.88[ASN][1000 genomes]
rs241545	0.87[ASN][1000 genomes]
rs241546	0.82[ASN][1000 genomes]
rs4144405	0.81[ASN][1000 genomes]
rs6573075	0.89[ASN][1000 genomes]
rs7142720	0.83[ASN][1000 genomes]
rs7158108	0.83[ASN][1000 genomes]
rs8009701	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56489800-56491600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:56491000-56492000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:56491000-56492400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr14:56491000-56495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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