Variant report

Variant	rs8009701
Chromosome Location	chr14:56495525-56495526
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10132204	0.84[ASN][1000 genomes]
rs11845096	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1679808	0.89[ASN][1000 genomes]
rs241544	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs241545	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs241546	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4144405	0.88[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6573075	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142720	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7158108	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56491000-56495800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:56492400-56497000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:56494000-56495600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr14:56494200-56496200	Enhancers	Colon Smooth Muscle	Colon
5	chr14:56494200-56496800	Enhancers	Psoas Muscle	Psoas
6	chr14:56495000-56495600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:56495000-56495600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:56495000-56496800	Enhancers	Aorta	Aorta
9	chr14:56495400-56495600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:56495400-56495600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:56495400-56495600	Flanking Active TSS	Ovary	ovary
12	chr14:56495400-56496200	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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