Variant report

Variant	rs1681886
Chromosome Location	chr8:107691880-107691881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107670031..107671733-chr8:107690741..107693246,2	MCF-7	breast:
2	chr8:107682179..107684259-chr8:107690430..107692278,2	MCF-7	breast:
3	chr8:107691238..107693332-chr8:107727540..107729802,2	K562	blood:
4	chr8:107691041..107693905-chr8:107694052..107695605,2	K562	blood:
5	chr8:107690055..107691912-chr8:107693867..107696317,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1601249	0.90[CHB][hapmap]
rs1676420	0.90[CHB][hapmap]
rs1681879	0.95[CHB][hapmap];0.85[CHD][hapmap]
rs1681884	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681904	0.90[CHB][hapmap]
rs1784490	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126581	0.85[CHB][hapmap]
rs2282509	0.85[CHB][hapmap]
rs776932	0.94[CHB][hapmap]
rs776933	0.90[CHB][hapmap]
rs776934	0.90[CHB][hapmap]
rs776938	0.90[CHB][hapmap]
rs776950	0.90[CHB][hapmap];0.85[CHD][hapmap]
rs776951	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs776965	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv611845	chr8:107689295-107698966	Strong transcription Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107671200-107697200	Weak transcription	HSMM	muscle
2	chr8:107672200-107718800	Weak transcription	Psoas Muscle	Psoas
3	chr8:107672400-107718600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:107672600-107696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:107672800-107696000	Weak transcription	Fetal Kidney	kidney
6	chr8:107674400-107696000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr8:107676200-107697400	Weak transcription	Left Ventricle	heart
8	chr8:107677600-107709400	Weak transcription	Pancreas	Pancrea
9	chr8:107677600-107718800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:107679200-107738200	Weak transcription	Right Ventricle	heart
11	chr8:107681200-107730200	Weak transcription	Small Intestine	intestine
12	chr8:107681600-107696600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:107682200-107696600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:107683600-107692800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:107683800-107718800	Weak transcription	Hela-S3	cervix
16	chr8:107686000-107697000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:107686000-107709200	Weak transcription	Gastric	stomach
18	chr8:107686200-107709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:107686400-107695200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr8:107686400-107695800	Weak transcription	Adipose Nuclei	Adipose
21	chr8:107686400-107696000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:107686400-107697400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:107686400-107709000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:107686400-107709000	Weak transcription	Esophagus	oesophagus
25	chr8:107686400-107709000	Weak transcription	Spleen	Spleen
26	chr8:107686600-107696000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:107686600-107696000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr8:107686600-107697400	Weak transcription	Fetal Intestine Large	intestine
29	chr8:107686600-107709000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:107686600-107709000	Weak transcription	Fetal Stomach	stomach
31	chr8:107686600-107711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr8:107686800-107696400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:107687000-107696000	Weak transcription	Primary T cells from cord blood	blood
34	chr8:107687000-107696400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr8:107687200-107695800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr8:107687200-107696000	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:107687200-107697400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:107687200-107697400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr8:107687200-107707600	Weak transcription	Fetal Intestine Small	intestine
40	chr8:107687200-107709000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:107687600-107692600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr8:107687800-107692800	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr8:107687800-107696400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr8:107688000-107713000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:107688600-107709200	Weak transcription	Aorta	Aorta
46	chr8:107688600-107718600	Weak transcription	Stomach Mucosa	stomach
47	chr8:107688800-107693200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:107688800-107695800	Weak transcription	NHDF-Ad	bronchial
49	chr8:107688800-107696400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr8:107689000-107693200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links