Variant report

Variant	rs1784490
Chromosome Location	chr8:107739708-107739709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107738435..107740351-chr8:107741469..107744040,2	K562	blood:
2	chr8:107738242..107740333-chr8:107752229..107754012,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000251892	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1681884	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681886	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
3	chr8:107719600-107762400	Weak transcription	Lung	lung
4	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
5	chr8:107719600-107775200	Weak transcription	Gastric	stomach
6	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
7	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:107724800-107751400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:107731600-107748400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:107733000-107751200	Weak transcription	HepG2	liver
11	chr8:107734200-107750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr8:107737200-107748600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:107737200-107750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr8:107737400-107740200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:107737600-107739800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:107738000-107740000	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:107738200-107739800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:107738200-107739800	Active TSS	Brain Angular Gyrus	brain
21	chr8:107738200-107739800	Active TSS	Brain Germinal Matrix	brain
22	chr8:107738200-107739800	Active TSS	HSMM	muscle
23	chr8:107738200-107740000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:107738200-107740000	Active TSS	Fetal Brain Female	brain
25	chr8:107738200-107740200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:107738200-107740200	Active TSS	Brain Substantia Nigra	brain
27	chr8:107738200-107740200	Active TSS	HSMMtube	muscle
28	chr8:107738200-107740800	Active TSS	Brain Anterior Caudate	brain
29	chr8:107738600-107739800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr8:107738600-107739800	Weak transcription	Thymus	Thymus
31	chr8:107738600-107740600	Weak transcription	Aorta	Aorta
32	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
35	chr8:107738800-107739800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr8:107738800-107742600	Weak transcription	Primary B cells from cord blood	blood
37	chr8:107738800-107747800	Weak transcription	GM12878-XiMat	blood
38	chr8:107738800-107751400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:107738800-107757000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr8:107739000-107739800	Weak transcription	Fetal Heart	heart
41	chr8:107739000-107740000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:107739000-107740200	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr8:107739000-107740200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr8:107739000-107742400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr8:107739000-107742600	Weak transcription	NHEK	skin
46	chr8:107739000-107752600	Weak transcription	Fetal Intestine Large	intestine
47	chr8:107739000-107753000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:107739000-107754200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:107739000-107758000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr8:107739000-107775200	Weak transcription	A549	lung

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