Variant report

Variant	rs16822616
Chromosome Location	chr6:32410083-32410084
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:32409002..32411494-chr6:32412118..32413877,2	K562	blood:
2	chr6:32404273..32406915-chr6:32408900..32411021,2	MCF-7	breast:
3	chr6:32409031..32411738-chr6:32430309..32432533,2	MCF-7	breast:

Extended variants
information (count: 182 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs12525707	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12527323	0.88[ASN][1000 genomes]
rs12529078	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12529093	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13193730	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13193827	0.88[ASN][1000 genomes]
rs13194556	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13198439	0.83[AFR][1000 genomes]
rs13199014	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13199346	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13199443	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13204032	0.87[AFR][1000 genomes]
rs13207140	0.82[AFR][1000 genomes]
rs13207455	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13207824	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13208132	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13209059	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13209234	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13212922	0.87[AFR][1000 genomes]
rs13215138	0.81[AFR][1000 genomes]
rs13218331	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17202717	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17202759	0.83[AFR][1000 genomes]
rs17202773	0.83[AFR][1000 genomes]
rs17209105	0.83[AFR][1000 genomes]
rs17209112	0.83[AFR][1000 genomes]
rs17209119	0.83[AFR][1000 genomes]
rs17209126	0.83[AFR][1000 genomes]
rs17209133	0.83[AFR][1000 genomes]
rs17496307	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17496549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28452472	0.82[EUR][1000 genomes]
rs28732216	0.82[ASN][1000 genomes]
rs28732220	0.83[AFR][1000 genomes]
rs28732221	0.83[AFR][1000 genomes]
rs28732223	0.83[AFR][1000 genomes]
rs28732224	0.83[AFR][1000 genomes]
rs28732229	0.83[AFR][1000 genomes]
rs28732230	0.83[AFR][1000 genomes]
rs28732232	0.83[AFR][1000 genomes]
rs28732234	0.83[AFR][1000 genomes]
rs28732235	0.83[AFR][1000 genomes]
rs28895027	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895028	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895029	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895030	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895031	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895032	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28895046	0.80[AFR][1000 genomes]
rs28895047	0.83[AFR][1000 genomes]
rs28895048	0.94[AFR][1000 genomes]
rs28895049	0.96[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895050	0.96[AFR][1000 genomes]
rs28895051	0.96[AFR][1000 genomes]
rs28895054	0.89[AFR][1000 genomes]
rs28895055	0.91[AFR][1000 genomes]
rs28895056	0.89[AFR][1000 genomes]
rs28895062	0.96[AFR][1000 genomes]
rs28895064	0.80[AFR][1000 genomes]
rs28895065	0.80[AFR][1000 genomes]
rs28895066	0.85[AFR][1000 genomes]
rs28895067	0.85[AFR][1000 genomes]
rs28895069	0.83[AFR][1000 genomes]
rs28895070	0.83[AFR][1000 genomes]
rs28895071	0.83[AFR][1000 genomes]
rs28895072	0.83[AFR][1000 genomes]
rs28895073	0.83[AFR][1000 genomes]
rs28895074	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895075	0.94[AFR][1000 genomes]
rs28895076	0.94[AFR][1000 genomes]
rs28895077	0.91[AFR][1000 genomes]
rs28895078	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895079	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895080	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895081	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895082	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895083	0.80[AFR][1000 genomes]
rs28895084	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895085	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895086	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895087	0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895088	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895089	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895090	0.90[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895091	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895092	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895093	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895094	0.83[AFR][1000 genomes]
rs28895095	0.83[AFR][1000 genomes]
rs28895100	0.83[AFR][1000 genomes]
rs28895101	0.83[AFR][1000 genomes]
rs28895102	0.85[AFR][1000 genomes]
rs28895103	0.85[AFR][1000 genomes]
rs28895104	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895105	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895106	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895107	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895109	0.85[AFR][1000 genomes]
rs28895110	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895113	0.83[AFR][1000 genomes]
rs28895114	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895115	0.87[AFR][1000 genomes]
rs28895116	0.87[AFR][1000 genomes]
rs28895117	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895131	0.82[ASN][1000 genomes]
rs28895132	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895133	0.85[AFR][1000 genomes]
rs28895134	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895135	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895136	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895137	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895138	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895141	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895142	0.81[AFR][1000 genomes]
rs28895143	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895144	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs28895208	0.83[AFR][1000 genomes]
rs28895213	0.83[AFR][1000 genomes]
rs28895214	0.83[AFR][1000 genomes]
rs3177928	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34330585	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34989128	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35458464	0.88[ASN][1000 genomes]
rs35817460	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35875335	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55890913	0.83[EUR][1000 genomes]
rs6923872	0.82[ASN][1000 genomes]
rs72847996	0.83[EUR][1000 genomes]
rs72850968	0.90[AFR][1000 genomes]
rs9268730	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9791280	0.88[ASN][1000 genomes]
rs9791337	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:50 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
8	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
9	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
10	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
11	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
12	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
13	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
17	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
19	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
20	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
21	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
22	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
23	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
24	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
26	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
27	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
28	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
29	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
30	nsv830630	chr6:32284496-32454243	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
31	nsv934227	chr6:32371384-32810913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
32	esv1806058	chr6:32371753-32542626	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
33	esv1807984	chr6:32371753-32542626	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	esv1825857	chr6:32371753-32542626	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
35	esv2758044	chr6:32371753-32705434	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
36	esv2759416	chr6:32371753-32705434	Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
37	nsv427753	chr6:32371753-32767352	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
38	nsv428142	chr6:32371753-32767352	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
39	nsv432879	chr6:32374622-32690945	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
40	nsv830631	chr6:32383667-32586115	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
41	esv1793402	chr6:32395420-32485966	Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	esv1809041	chr6:32395420-32485966	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	esv1809504	chr6:32395420-32485966	Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
44	esv1820528	chr6:32395420-32485966	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
45	esv1825442	chr6:32395420-32485966	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
46	esv1845184	chr6:32395420-32485966	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
47	esv1827986	chr6:32404878-32458840	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
48	nsv870091	chr6:32405432-32518641	Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
49	nsv602111	chr6:32406342-32433167	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
50	nsv1034950	chr6:32408527-32530286	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16822616	HLA-DQB1	Cis_1M	lymphoblastoid	RTeQTL
rs16822616	HLA-DRB1///HLA-DRB3///LOC730415	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32407200-32410600	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr6:32407400-32410200	Active TSS	Duodenum Mucosa	Duodenum
3	chr6:32407400-32411000	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:32407600-32410400	Active TSS	Brain Hippocampus Middle	brain
5	chr6:32407800-32415000	Weak transcription	Gastric	stomach
6	chr6:32408000-32410400	Weak transcription	Left Ventricle	heart
7	chr6:32408000-32410600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:32408000-32412800	Weak transcription	Right Ventricle	heart
9	chr6:32408200-32410800	Weak transcription	Small Intestine	intestine
10	chr6:32408200-32411400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
11	chr6:32408200-32411800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
12	chr6:32408200-32412200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
13	chr6:32408600-32411000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:32408600-32415200	Weak transcription	Stomach Mucosa	stomach
15	chr6:32408800-32410400	Active TSS	Adipose Nuclei	Adipose
16	chr6:32408800-32410800	Weak transcription	Brain Anterior Caudate	brain
17	chr6:32408800-32411000	Weak transcription	Lung	lung
18	chr6:32408800-32411800	Weak transcription	Liver	Liver
19	chr6:32408800-32415600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:32409200-32410200	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
21	chr6:32409200-32410200	Weak transcription	Brain Substantia Nigra	brain
22	chr6:32409200-32410200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:32409200-32410200	Enhancers	Spleen	Spleen
24	chr6:32409200-32410600	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
25	chr6:32409200-32412200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
26	chr6:32409200-32413000	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr6:32409400-32412200	Weak transcription	Colonic Mucosa	Colon
28	chr6:32409600-32411200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:32410000-32410200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
30	chr6:32410000-32410400	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:32410000-32410600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:32410000-32410800	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:32410000-32411800	Weak transcription	Thymus	Thymus
34	chr6:32410000-32412600	Strong transcription	Fetal Thymus	thymus
35	chr6:32410000-32413200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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