Variant report

Variant	rs16822906
Chromosome Location	chr1:184300796-184300797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16822848	0.88[YRI][hapmap]
rs16822897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59167964	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184298600-184301400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:184299000-184300800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:184299000-184300800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:184299400-184300800	Enhancers	Fetal Heart	heart
5	chr1:184299800-184301000	Weak transcription	Left Ventricle	heart
6	chr1:184300200-184300800	Enhancers	NHEK	skin
7	chr1:184300400-184300800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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