Variant report
| Variant | rs16822848 |
|---|---|
| Chromosome Location | chr1:184288496-184288497 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000207080 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs1111087 | 0.81[AFR][1000 genomes] |
| rs12128914 | 0.84[ASN][1000 genomes] |
| rs16822764 | 0.84[AFR][1000 genomes] |
| rs16822766 | 0.91[ASN][1000 genomes] |
| rs16822783 | 0.84[AFR][1000 genomes] |
| rs16822906 | 0.88[YRI][hapmap] |
| rs1810915 | 0.88[AFR][1000 genomes] |
| rs1930289 | 0.89[AFR][1000 genomes] |
| rs4622032 | 0.84[ASN][1000 genomes] |
| rs59737381 | 0.84[AFR][1000 genomes] |
| rs6424946 | 0.84[ASN][1000 genomes] |
| rs6669875 | 0.87[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73059544 | 0.87[AFR][1000 genomes] |
| rs73059572 | 0.84[ASN][1000 genomes] |
| rs73059573 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7516012 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530079 | chr1:183797938-184639971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
