Variant report

Variant	rs16823661
Chromosome Location	chr2:182165822-182165823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10178445	0.83[EUR][1000 genomes]
rs10183522	0.83[EUR][1000 genomes]
rs10497578	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12613489	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12621029	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12621069	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12623733	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16867395	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16867396	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16867398	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867399	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16867403	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16867404	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16867407	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16867409	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16867411	0.91[EUR][1000 genomes]
rs16867412	0.88[EUR][1000 genomes]
rs16867414	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16867415	0.83[EUR][1000 genomes]
rs16867417	0.83[EUR][1000 genomes]
rs16867418	0.83[EUR][1000 genomes]
rs16867421	0.83[EUR][1000 genomes]
rs4627521	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58869569	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60453369	0.83[EUR][1000 genomes]
rs60481141	0.83[EUR][1000 genomes]
rs61097715	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182164000-182167800	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr2:182164200-182166000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:182164200-182168000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:182165000-182166200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:182165000-182166200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:182165200-182167400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:182165400-182166000	Enhancers	Primary B cells from peripheral blood	blood
8	chr2:182165400-182166000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr2:182165400-182166200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:182165400-182166200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr2:182165400-182166200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
12	chr2:182165400-182166200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:182165400-182166200	Enhancers	Fetal Thymus	thymus
14	chr2:182165400-182166200	Flanking Active TSS	Dnd41	blood
15	chr2:182165400-182166400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr2:182165400-182168000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:182165400-182169800	Enhancers	Primary hematopoietic stem cells	blood
18	chr2:182165600-182166000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr2:182165600-182166000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr2:182165600-182166200	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr2:182165600-182166200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr2:182165600-182168600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:182165800-182166000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:182165800-182166200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr2:182165800-182166200	Enhancers	Duodenum Mucosa	Duodenum
26	chr2:182165800-182166600	Enhancers	Thymus	Thymus
27	chr2:182165800-182169000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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