Variant report

Variant	rs16867407
Chromosome Location	chr2:182191411-182191412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10178445	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10183522	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10497578	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12613489	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12623733	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16823661	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16867398	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16867399	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16867403	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16867404	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16867409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16867411	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867412	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867414	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867415	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867417	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16867418	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16867421	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16867422	0.80[ASN][1000 genomes]
rs2219754	0.80[ASN][1000 genomes]
rs4627521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56144959	0.80[ASN][1000 genomes]
rs59403061	0.80[ASN][1000 genomes]
rs60453369	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60481141	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61097715	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1002647	chr2:182078521-182392273	Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv536064	chr2:182078521-182392273	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv834476	chr2:182179249-182360259	Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182185800-182199000	Weak transcription	Dnd41	blood
2	chr2:182190200-182191600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:182190200-182192000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:182190400-182191600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:182190400-182191800	Enhancers	Primary T cells from cord blood	blood
6	chr2:182190800-182191600	Enhancers	Primary hematopoietic stem cells	blood
7	chr2:182191000-182191600	Enhancers	Primary B cells from cord blood	blood
8	chr2:182191200-182191600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:182191200-182191600	Enhancers	Primary B cells from peripheral blood	blood
10	chr2:182191200-182191600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr2:182191200-182191600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:182191200-182191600	Enhancers	Fetal Brain Female	brain
13	chr2:182191200-182191800	Enhancers	Brain Germinal Matrix	brain
14	chr2:182191200-182192000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:182191400-182191800	Enhancers	Fetal Thymus	thymus

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