Variant report

Variant	rs16824313
Chromosome Location	chr2:184215051-184215052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11680894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11691063	1.00[AMR][1000 genomes]
rs16824418	0.92[AMR][1000 genomes]
rs16824423	1.00[AMR][1000 genomes]
rs16824429	0.92[AMR][1000 genomes]
rs16824430	0.92[AMR][1000 genomes]
rs16824433	1.00[AMR][1000 genomes]
rs16824444	1.00[AMR][1000 genomes]
rs16824461	1.00[AMR][1000 genomes]
rs16824581	0.85[AMR][1000 genomes]
rs2218030	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41374852	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842598	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010799	chr2:183855680-184244721	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv536072	chr2:183855680-184244721	Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184213600-184216400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:184214600-184215800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:184214600-184215800	Weak transcription	Brain Germinal Matrix	brain
4	chr2:184214600-184216000	Weak transcription	Ovary	ovary
5	chr2:184214600-184216400	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:184214800-184215800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:184214800-184215800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:184214800-184216000	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:184215000-184216000	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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