Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1098921	1.00[ASN][1000 genomes]
rs11680894	0.92[AMR][1000 genomes]
rs11691063	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16824313	0.92[AMR][1000 genomes]
rs16824423	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824429	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16824430	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16824433	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16824444	0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs16824461	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16824581	0.84[ASN][1000 genomes]
rs1946810	0.87[ASN][1000 genomes]
rs2218030	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41374852	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs842552	0.86[ASN][1000 genomes]
rs842561	1.00[ASN][1000 genomes]
rs842566	1.00[ASN][1000 genomes]
rs842573	0.99[ASN][1000 genomes]
rs842583	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs842585	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs842594	1.00[ASN][1000 genomes]
rs842598	0.89[ASN][1000 genomes]
rs864004	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16824418	CXCL10	trans	brain	seeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184274200-184281600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:184274400-184275600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:184274600-184275600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr2:184275000-184275800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:184275000-184276000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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