Variant report

Variant	rs16824598
Chromosome Location	chr2:184356242-184356243
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10931080	0.82[ASN][1000 genomes]
rs16824595	0.95[ASN][1000 genomes]
rs4666914	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508188	chr2:184353162-184383232	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184351000-184360200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:184355000-184356400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:184355400-184356400	Enhancers	Fetal Stomach	stomach
4	chr2:184355600-184356400	Enhancers	Brain Germinal Matrix	brain
5	chr2:184355600-184357600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:184355800-184356800	Enhancers	Fetal Heart	heart
7	chr2:184356000-184356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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