Variant report

Variant	rs16824905
Chromosome Location	chr3:116159810-116159811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10511356	1.00[CEU][hapmap]
rs11925640	1.00[CEU][hapmap]
rs16824815	1.00[CEU][hapmap]
rs17645771	1.00[CEU][hapmap]
rs17646114	1.00[CEU][hapmap]
rs17646126	1.00[CEU][hapmap]
rs17646294	1.00[CEU][hapmap]
rs17646747	1.00[CEU][hapmap]
rs17702489	1.00[CEU][hapmap]
rs17702536	1.00[CEU][hapmap]
rs2116307	1.00[CEU][hapmap]
rs41457247	1.00[CEU][hapmap]
rs6782605	1.00[CEU][hapmap]
rs7433207	1.00[CEU][hapmap]
rs7619749	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116143400-116161200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:116143600-116161000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116144200-116160400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:116144200-116160400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:116152800-116161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:116152800-116161200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:116152800-116161400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:116153200-116161200	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:116156400-116160400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:116158400-116161800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:116158800-116161600	Enhancers	NH-A	brain
12	chr3:116159000-116160400	Enhancers	Brain Angular Gyrus	brain
13	chr3:116159000-116160400	Enhancers	Brain Hippocampus Middle	brain
14	chr3:116159000-116161000	Enhancers	Brain Substantia Nigra	brain
15	chr3:116159000-116163400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:116159200-116160400	Weak transcription	Brain Germinal Matrix	brain
17	chr3:116159200-116161200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:116159400-116160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:116159400-116160600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:116159400-116161200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:116159400-116161200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:116159600-116161000	Enhancers	Brain Anterior Caudate	brain
23	chr3:116159600-116161200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:116159800-116160200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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