Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511356	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11925640	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11927240	0.81[EUR][1000 genomes]
rs16824815	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs16824905	1.00[CEU][hapmap]
rs17645771	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17646114	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17646126	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17646294	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17646747	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs17702489	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2116307	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28590146	0.81[EUR][1000 genomes]
rs34419229	0.88[EUR][1000 genomes]
rs41457247	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs59313401	0.81[EUR][1000 genomes]
rs59428849	0.81[EUR][1000 genomes]
rs60148139	0.81[EUR][1000 genomes]
rs6771542	0.81[EUR][1000 genomes]
rs6782605	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs72950173	0.88[EUR][1000 genomes]
rs72950188	0.88[EUR][1000 genomes]
rs72950190	0.88[EUR][1000 genomes]
rs72950194	0.88[EUR][1000 genomes]
rs72951910	0.81[EUR][1000 genomes]
rs72951915	0.81[EUR][1000 genomes]
rs72951938	0.81[EUR][1000 genomes]
rs7433207	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7619749	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7630573	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116017000-116029600	Enhancers	Colon Smooth Muscle	Colon
2	chr3:116019200-116028400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:116019600-116037000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:116022200-116033000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:116024000-116028600	Weak transcription	Brain Anterior Caudate	brain
6	chr3:116025800-116028400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:116025800-116028400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:116026000-116031600	Weak transcription	Brain Angular Gyrus	brain
9	chr3:116026000-116031600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:116026200-116027400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:116026200-116037200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr3:116026400-116034000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr3:116027000-116027400	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:116027000-116028800	Enhancers	Brain Substantia Nigra	brain

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