Variant report

Variant	rs72950188
Chromosome Location	chr3:116103275-116103276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10511356	0.93[EUR][1000 genomes]
rs11925640	0.93[EUR][1000 genomes]
rs11927240	0.93[EUR][1000 genomes]
rs16824815	1.00[EUR][1000 genomes]
rs17645771	0.88[EUR][1000 genomes]
rs17646114	0.90[EUR][1000 genomes]
rs17646126	0.90[EUR][1000 genomes]
rs17646294	0.95[EUR][1000 genomes]
rs17646747	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17702489	0.88[EUR][1000 genomes]
rs17702536	0.88[EUR][1000 genomes]
rs1920188	0.80[AFR][1000 genomes]
rs2116307	0.89[EUR][1000 genomes]
rs28590146	0.93[EUR][1000 genomes]
rs34419229	1.00[EUR][1000 genomes]
rs41457247	0.93[EUR][1000 genomes]
rs59313401	0.93[EUR][1000 genomes]
rs59428849	0.93[EUR][1000 genomes]
rs60148139	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6771542	0.93[EUR][1000 genomes]
rs6782605	0.95[EUR][1000 genomes]
rs72950173	1.00[EUR][1000 genomes]
rs72950190	1.00[EUR][1000 genomes]
rs72950194	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72950202	0.90[EUR][1000 genomes]
rs72951910	0.93[EUR][1000 genomes]
rs72951915	0.93[EUR][1000 genomes]
rs72951916	0.90[EUR][1000 genomes]
rs72951935	0.90[EUR][1000 genomes]
rs72951938	0.93[EUR][1000 genomes]
rs7433207	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7619749	1.00[EUR][1000 genomes]
rs7630573	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877361	chr3:116017931-116138039	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv437338	chr3:116076289-116110635	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757005	chr3:116085678-116121948	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2759170	chr3:116085678-116121948	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1014989	chr3:116096198-116109192	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1003543	chr3:116096198-116111430	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3463484	chr3:116098674-116110408	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3463485	chr3:116098674-116110408	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv21066	chr3:116098946-116109977	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv516570	chr3:116099041-116108165	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1011591	chr3:116099041-116109192	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116096400-116108000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:116102200-116104200	Enhancers	Brain Substantia Nigra	brain
3	chr3:116102600-116103600	Enhancers	Brain Hippocampus Middle	brain
4	chr3:116102600-116103800	Enhancers	Brain Germinal Matrix	brain
5	chr3:116102600-116104400	Enhancers	Brain Anterior Caudate	brain
6	chr3:116102800-116103800	Enhancers	Brain Angular Gyrus	brain
7	chr3:116102800-116103800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr3:116102800-116104200	Enhancers	Colon Smooth Muscle	Colon
9	chr3:116103000-116103400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:116103000-116107400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:116103000-116107400	Weak transcription	Fetal Brain Male	brain
12	chr3:116103000-116142000	Weak transcription	Fetal Lung	lung
13	chr3:116103200-116103600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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