Variant report

Variant	rs16827417
Chromosome Location	chr2:231440375-231440376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10193165	1.00[CHB][hapmap]
rs12468515	1.00[CHB][hapmap]
rs13021124	1.00[CHB][hapmap]
rs13021655	1.00[CHB][hapmap]
rs17276438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17354508	0.82[EUR][1000 genomes]
rs56047456	0.97[EUR][1000 genomes]
rs62192828	0.94[EUR][1000 genomes]
rs62192830	0.97[EUR][1000 genomes]
rs6748334	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875953	chr2:231415189-231457819	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875954	chr2:231421531-231441828	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv11055	chr2:231437916-231440779	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231439400-231440800	ZNF genes & repeats	GM12878-XiMat	blood
2	chr2:231439800-231440600	Enhancers	Placenta	Placenta
3	chr2:231439800-231440800	Enhancers	Fetal Thymus	thymus
4	chr2:231439800-231443800	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:231440000-231440600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:231440000-231440800	Enhancers	K562	blood
7	chr2:231440000-231441000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:231440000-231441000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr2:231440000-231442200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:231440000-231442600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr2:231440200-231440400	Enhancers	Primary T cells from cord blood	blood
12	chr2:231440200-231440400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:231440200-231440800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr2:231440200-231443400	Enhancers	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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