Variant report

Variant	rs13021124
Chromosome Location	chr2:231539173-231539174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231538907..231540921-chr2:231553335..231556104,2	MCF-7	breast:
2	chr2:231538305..231542318-chr2:231576674..231578715,3	K562	blood:

Variant related genes	Relation type
ENSG00000135932	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10193165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200531	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207627	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689585	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468515	1.00[CHB][hapmap]
rs12694879	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989985	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021378	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827417	1.00[CHB][hapmap]
rs17276438	1.00[CHB][hapmap]
rs6720116	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726604	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747001	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747003	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6747983	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6748100	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748334	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566017	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566134	0.91[EUR][1000 genomes]
rs7566144	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231533400-231539400	Weak transcription	K562	blood
2	chr2:231534200-231541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:231534200-231547800	Weak transcription	Hela-S3	cervix
4	chr2:231534600-231541200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:231534600-231542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:231534600-231545400	Weak transcription	NH-A	brain
7	chr2:231534600-231545600	Weak transcription	Right Ventricle	heart
8	chr2:231534800-231542600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:231535200-231539400	Weak transcription	Placenta	Placenta
10	chr2:231535800-231539600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr2:231536000-231541200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:231536200-231539200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:231536200-231541800	Weak transcription	NHEK	skin
14	chr2:231536400-231542000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:231536400-231542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:231536400-231542000	Weak transcription	HMEC	breast
17	chr2:231536600-231539800	Weak transcription	Fetal Thymus	thymus
18	chr2:231536600-231542000	Weak transcription	A549	lung
19	chr2:231537800-231539200	Weak transcription	Psoas Muscle	Psoas
20	chr2:231537800-231539200	Weak transcription	HSMMtube	muscle
21	chr2:231537800-231539400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:231537800-231542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:231538400-231541400	Enhancers	Fetal Muscle Leg	muscle
24	chr2:231539000-231540000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr2:231539000-231541200	Enhancers	Skeletal Muscle Female	skeletal muscle

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