Variant report

Variant	rs11689585
Chromosome Location	chr2:231537356-231537357
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231534259..231536123-chr2:231536363..231539009,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10193165	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200531	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207627	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207959	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12694879	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021124	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021378	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021655	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720116	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726604	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747001	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747003	0.91[EUR][1000 genomes]
rs6747983	0.99[EUR][1000 genomes]
rs6748100	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748334	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566017	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566134	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7566144	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231533400-231539400	Weak transcription	K562	blood
2	chr2:231533600-231537400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:231534200-231541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:231534200-231547800	Weak transcription	Hela-S3	cervix
5	chr2:231534600-231541200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:231534600-231542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr2:231534600-231545400	Weak transcription	NH-A	brain
8	chr2:231534600-231545600	Weak transcription	Right Ventricle	heart
9	chr2:231534800-231542600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr2:231535200-231539400	Weak transcription	Placenta	Placenta
11	chr2:231535400-231537400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:231535400-231537800	Enhancers	HSMMtube	muscle
13	chr2:231535600-231537800	Enhancers	Psoas Muscle	Psoas
14	chr2:231535800-231539600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr2:231536000-231541200	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr2:231536200-231539200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:231536200-231541800	Weak transcription	NHEK	skin
18	chr2:231536400-231542000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:231536400-231542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:231536400-231542000	Weak transcription	HMEC	breast
21	chr2:231536600-231539800	Weak transcription	Fetal Thymus	thymus
22	chr2:231536600-231542000	Weak transcription	A549	lung
23	chr2:231537200-231537600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr2:231537200-231537800	Enhancers	Fetal Muscle Leg	muscle
25	chr2:231537200-231537800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links