Variant report

Variant	rs12989985
Chromosome Location	chr2:231537734-231537735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231534259..231536123-chr2:231536363..231539009,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10193165	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200531	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207627	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207959	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689585	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12694879	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021124	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021378	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021655	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6720116	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726604	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747001	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747003	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6747983	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6748100	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748334	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566017	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566134	0.92[EUR][1000 genomes]
rs7566144	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231533400-231539400	Weak transcription	K562	blood
2	chr2:231534200-231541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:231534200-231547800	Weak transcription	Hela-S3	cervix
4	chr2:231534600-231541200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:231534600-231542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr2:231534600-231545400	Weak transcription	NH-A	brain
7	chr2:231534600-231545600	Weak transcription	Right Ventricle	heart
8	chr2:231534800-231542600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:231535200-231539400	Weak transcription	Placenta	Placenta
10	chr2:231535400-231537800	Enhancers	HSMMtube	muscle
11	chr2:231535600-231537800	Enhancers	Psoas Muscle	Psoas
12	chr2:231535800-231539600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:231536000-231541200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr2:231536200-231539200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:231536200-231541800	Weak transcription	NHEK	skin
16	chr2:231536400-231542000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:231536400-231542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:231536400-231542000	Weak transcription	HMEC	breast
19	chr2:231536600-231539800	Weak transcription	Fetal Thymus	thymus
20	chr2:231536600-231542000	Weak transcription	A549	lung
21	chr2:231537200-231537800	Enhancers	Fetal Muscle Leg	muscle
22	chr2:231537200-231537800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr2:231537400-231537800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:231537400-231537800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr2:231537600-231537800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:231537600-231537800	Enhancers	Fetal Muscle Trunk	muscle

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