Variant report

Variant	rs10200531
Chromosome Location	chr2:231543242-231543243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:231540920..231543829-chr2:231553307..231555960,2	K562	blood:
2	chr2:231539338..231543383-chr2:231544292..231546502,5	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10193165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207627	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207959	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11689585	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468515	1.00[CHB][hapmap]
rs12694879	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12989985	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021378	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16827417	1.00[CHB][hapmap]
rs17276438	1.00[CHB][hapmap]
rs6720116	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747003	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6747983	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6748100	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6748334	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566017	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566134	0.89[EUR][1000 genomes]
rs7566144	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231534200-231547800	Weak transcription	Hela-S3	cervix
2	chr2:231534600-231545400	Weak transcription	NH-A	brain
3	chr2:231534600-231545600	Weak transcription	Right Ventricle	heart
4	chr2:231539600-231543400	Weak transcription	Psoas Muscle	Psoas
5	chr2:231540000-231546200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:231540800-231545000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:231541200-231544000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:231542400-231544600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:231542600-231543400	ZNF genes & repeats	Placenta	Placenta
10	chr2:231542600-231543600	ZNF genes & repeats	HMEC	breast
11	chr2:231542600-231543800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr2:231542600-231543800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr2:231542600-231544600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:231542600-231545400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:231542800-231543400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:231542800-231543600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
17	chr2:231542800-231543600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr2:231542800-231544000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr2:231542800-231544400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr2:231543000-231543600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr2:231543000-231543600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr2:231543000-231543600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr2:231543000-231543600	Enhancers	Dnd41	blood
24	chr2:231543000-231543800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr2:231543000-231543800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr2:231543200-231543400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr2:231543200-231543600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr2:231543200-231543800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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