Variant report

Variant	rs6747003
Chromosome Location	chr2:231540866-231540867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:231538907..231540921-chr2:231553335..231556104,2	MCF-7	breast:
2	chr2:231538305..231542318-chr2:231576674..231578715,3	K562	blood:
3	chr2:231521021..231523340-chr2:231539283..231541380,2	K562	blood:
4	chr2:231539338..231543383-chr2:231544292..231546502,5	K562	blood:

Variant related genes	Relation type
ENSG00000135932	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10193165	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10200531	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10207627	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10207959	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11689585	0.91[EUR][1000 genomes]
rs12694879	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12989985	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13021124	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13021378	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13021655	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6720116	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6726604	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6747001	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6747983	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6748100	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6748334	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7566017	0.87[EUR][1000 genomes]
rs7566134	0.94[EUR][1000 genomes]
rs7566144	0.81[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231534200-231541800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:231534200-231547800	Weak transcription	Hela-S3	cervix
3	chr2:231534600-231541200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:231534600-231542800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:231534600-231545400	Weak transcription	NH-A	brain
6	chr2:231534600-231545600	Weak transcription	Right Ventricle	heart
7	chr2:231534800-231542600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr2:231536000-231541200	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:231536200-231541800	Weak transcription	NHEK	skin
10	chr2:231536400-231542000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:231536400-231542000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:231536400-231542000	Weak transcription	HMEC	breast
13	chr2:231536600-231542000	Weak transcription	A549	lung
14	chr2:231537800-231542000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:231538400-231541400	Enhancers	Fetal Muscle Leg	muscle
16	chr2:231539000-231541200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr2:231539200-231542400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:231539600-231543000	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr2:231539600-231543400	Weak transcription	Psoas Muscle	Psoas
20	chr2:231540000-231541800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:231540000-231546200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr2:231540200-231541800	Weak transcription	Placenta	Placenta
23	chr2:231540800-231545000	Enhancers	Primary monocytes fromperipheralblood	blood

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