Variant report

Variant	rs16827662
Chromosome Location	chr3:157168586-157168587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156801344..156803904-chr3:157167534..157169508,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1009872	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs10513515	0.81[EUR][1000 genomes]
rs1114237	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs12634442	0.82[CHB][hapmap]
rs1378800	0.86[YRI][hapmap]
rs16827705	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs16827727	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs17391399	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs1822398	0.94[EUR][1000 genomes]
rs1838143	0.82[YRI][hapmap]
rs35638371	0.95[EUR][1000 genomes]
rs35973239	0.84[EUR][1000 genomes]
rs57566161	0.95[EUR][1000 genomes]
rs58178116	0.81[EUR][1000 genomes]
rs73158515	0.95[EUR][1000 genomes]
rs73158516	0.95[EUR][1000 genomes]
rs73158523	0.94[EUR][1000 genomes]
rs73158525	0.94[EUR][1000 genomes]
rs73158527	0.94[EUR][1000 genomes]
rs73158534	0.88[EUR][1000 genomes]
rs73158539	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157159000-157177400	Weak transcription	NH-A	brain
2	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157160600-157176800	Weak transcription	Pancreas	Pancrea
4	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:157162000-157171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:157162400-157177000	Weak transcription	HSMM	muscle
7	chr3:157163800-157177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:157164600-157169800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr3:157164600-157169800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:157164600-157185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:157164800-157169400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:157164800-157169400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:157164800-157176800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:157165000-157169800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:157165200-157177200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:157165400-157169400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:157165600-157169600	Weak transcription	HUVEC	blood vessel
18	chr3:157165800-157169400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:157165800-157170600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:157165800-157171000	Weak transcription	NHDF-Ad	bronchial
21	chr3:157165800-157174400	Weak transcription	Osteobl	bone

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